Software Catalogue

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HPC Cluster (raad2)

Software listed in this section is deployed on the TAMUQ HPC cluster raad2. Each package is licensed under a different agreement. Users are required to review and abide by all applicable license terms.

Users may contact us via the Service Desk (servicedesk@qatar.tamu.edu) to request installation of packages not currently found on the list below. Note that applications required by individual users (particularly open source packages) may also be installed by the user himself/herself within their home directory; such installs do not require administrative rights. If a new package is likely to be used by multiple users however, or if a user does not have the know-how to install a package themselves, our staff may be requested to perform the install.

Product Domain Vendor Version Internal

Documentation

External

Documentation

Comment
Scientific Applications
ANSYS Academic

Research

Computation Fluid Dynamics ANSYS Inc. v195, v231, 2023R1, 2023R2 GreenDocRCicon.png Documents blue icon 413.svg.png
CERN Open Data Client Computational Physics CERN 0.3.0 GreenDocRCicon.png Documents blue icon 413.svg.png
COMSOL Multiphysics Physics Modeling & Simulation COMSOL 6.2 Documents blue icon 413.svg.png
CP2K Molecular Dynamics cp2k.org 2023.1 GreenDocRCicon.png Documents blue icon 413.svg.png
FEniCS Scientific Computing Tools fenicsproject.org 201910b1, 6u06_c604 GreenDocRCicon.png Documents blue icon 413.svg.png
Garfield Computational Physics CERN parallel, serial Documents blue icon 413.svg.png
Gate Computational Physics opengate

collaboration

9.1, 9.3 Documents blue icon 413.svg.png
Gaussian Computational Chemistry Gaussian Inc. g09.d01 GreenDocRCicon.png Documents blue icon 413.svg.png
Geant4 Particle Dynamics CERN 10.07.p02, 10.07.p03, 11.1.2 Documents blue icon 413.svg.png
GROMACS Molecular Dynamics GROMACS 4.6.5 GreenDocRCicon.png Documents blue icon 413.svg.png
LAMMPS Molecular Dynamics Sandia National

Labs

12Dec18li GreenDocRCicon.png Documents blue icon 413.svg.png
MadGraph5_

aMC@NLO

Computational Physics launchpad.net 2.6.7 Documents blue icon 413.svg.png
MATLAB Numerical Analysis The Mathworks r2016a, r2019a, r2021a, r2022a GreenDocRCicon.png Documents blue icon 413.svg.png
NAMD Molecular Dynamics uiuc.edu 212 GreenDocRCicon.png Documents blue icon 413.svg.png
OpenFoam Math Numerical Library CFD support OpenFOAM-in-Box-20.09v2-22-g178c07ee Documents blue icon 413.svg.png
ROOT Data Analysis CERN 5.34.38, 6.18.04, 6.19.02, 6.28.06 GreenDocRCicon.png Documents blue icon 413.svg.png
STIR Tomographis Imaging Open Source 4.0.1 Documents blue icon 413.svg.png
TOPAS Particle Simulation topasmc.org v37, v39 GreenDocRCicon.png Documents blue icon 413.svg.png
Development / Runtime tools
anaconda Python package management ANACONDA 2023.03-1, 2023.07-2, anaconda3 GreenDocRCicon.png Documents blue icon 413.svg.png
cmake Software development

toolchain

cmake.org 3.22.2 Documents blue icon 413.svg.png
GCC Compiler suite GNU 8.1.0, 8.3.0, 9.3.0, 10.3.0, 11.2.0, 12.1.0 Documents blue icon 413.svg.png
GDB Debugger GNU 11.1 Documents blue icon 413.svg.png
PGI Compiler suite PGroup 16.10 GreenDocRCicon.png Documents blue icon 413.svg.png
Python Programming Language Python 3.8.5.1, 3.9.13.2, 3.11.3 GreenDocRCicon.png Documents blue icon 413.svg.png
R Programming Language r-projet.org 362 , 363, 422, 4.0.5.0, 4.2.1.1 GreenDocRCicon.png Documents blue icon 413.svg.png
SingularityPRO Container runtime Sylabs 3.7-4 GreenDocRCicon.png Documents blue icon 413.svg.png
SLURM Workload Manager SchedMD 20027 GreenDocRCicon.png Documents blue icon 413.svg.png
CRAY Software Development toolchain
Cray C Compiler

(CCE)

Compiler Cray GreenDocRCicon.png Documents blue icon 413.svg.png
Cray Fortran Compiler

(CCE)

Compiler Cray GreenDocRCicon.png Documents blue icon 413.svg.png
Cray-mpich Parallelization library Cray 7.7.17, 7.7.20 GreenDocRCicon.png Documents blue icon 413.svg.png
Cray Scientific and

Math Libraries (SCML)

Math Numerical Library Cray Documents blue icon 413.svg.png
Intel Software Development toolchain (2020)
Intel C / C++ Compiler Compiler Intel Inc. 19.1.3.304 GreenDocRCicon.png Documents blue icon 413.svg.png
Intel Fortran Compiler Compiler Intel Inc. 19.1.3.304 GreenDocRCicon.png Documents blue icon 413.svg.png
Intel MPI Library Parallelization library Intel Inc. Documents blue icon 413.svg.png
Intel Math Kernel Lib. (MKL) Math Numerical Library Intel Inc. Documents blue icon 413.svg.png
Libraries
Boost C++ helper libraries Boost.org 1.76.0 Documents blue icon 413.svg.png
CLHEP Computational Physics CERN 2.4.4.1 Documents blue icon 413.svg.png
FFmpeg Audio/Video flux libraries ffmpeg.org Documents blue icon 413.svg.png
GDCM Computational Medical INSA LYON 3.0.21 Documents blue icon 413.svg.png
GSL

(GNU Scientific Library)

Math Numerical Library GNU 2.7 Documents blue icon 413.svg.png
IMSL Math Numerical Library IMSL 2021.0.0 Documents blue icon 413.svg.png
jemalloc System library for

memory allocation

jemalloc.net 5.1.0.3 Documents blue icon 413.svg.png


Desktop & Laptop Systems

Research Computing provides guidance for installing these applications on user desktops and/or laptops. Installation files for these applications may be found in the following shared network folder : P:\Office of Research\Research Computing\RC

Product Domain Vendor Version Internal

Documentation

External

Documentation

Comment
Scientific Applications
ABAQUS Structural Mechanics Simulia 6.11-1, 6.12, 6.13-1, 2016, 2019 GreenDocRCicon.png Documents blue icon 413.svg.png
ANSYS Academic

Research

Computation Fluid Dynamics ANSYS Inc. 14, 14.5, 16.1, 16.2, 17.2, 18.1, 19.2, 2019R3, 2019R2, 2023R1 GreenDocRCicon.png Documents blue icon 413.svg.png
ANSYS Chemkin Computational Chemistry ANSYS Inc. 18.0 GreenDocRCicon.png
ANSYS HFSS Structure Simulation Software ANSYS Inc. 15.0
Autodesk 3DS MAX Computer Graphics Autodesk 2015 Documents blue icon 413.svg.png
Autodesk Stingray 3D game engine Autodesk 1.4.728 Documents blue icon 413.svg.png
Avizo Image Analysis Thermofisher 7.0, 8.0, 8.0.1, 8.1, 9.2, 2019.4, 2021.2, 2023.1.1 GreenDocRCicon.png Documents blue icon 413.svg.png
ChemBioOffice Ultra

(ChemOffice for Windows

or ChemDraw for Mac)

Productivity Tools for Chemists & Biologists PerkinElmer 22.0 Documents blue icon 413.svg.png
COMSOL Multiphysics Physics Modeling & Simulation COMSOL 6.2 Documents blue icon 413.svg.png
Ensight Simulation Data Visualization ANSYS Inc. 100Full-10.0.2h GreenDocRCicon.png Documents blue icon 413.svg.png
LabVIEW System Engineering Software Emerson fall2012, 2014, 2015 SP1, 2016 GreenDocRCicon.png Documents blue icon 413.svg.png
Wolfram Mathematica Symbolic Analysis Wolfram Research 9.00, 11.0.1, 11.3.0, 13.1.0 GreenDocRCicon.png Documents blue icon 413.svg.png
MATLAB Numerical Analysis The Mathworks 2011b, 2012a, 2012b, 2013a, 2013b, 2014a, 2015a, 2016a, 2017a, 2017b, 2017a, 2017b, 2018b, 2019a, 2019b, 2021a, 2023a install:

GreenDocRCicon.png
use:
GreenDocRCicon.png

Documents blue icon 413.svg.png
OpenFoam Computational Fluid Dynamics openfoam 231 GreenDocRCicon.png Documents blue icon 413.svg.png
Origin Data Analysis and Graphing OriginLab 851, 2015, 2017, 2020, 2023b GreenDocRCicon.png Documents blue icon 413.svg.png
QuantumATK Material Simulation Synopsys 2019.03 Documents blue icon 413.svg.png
SigmaPlot Data Visualization and Graphing Systat Software 11.0, 12.0 GreenDocRCicon.png Documents blue icon 413.svg.png
SOLIDWORKS 3D CAD Design software Dassault Systemes 2013, 2014, 2015 SP04, 2017, 2019, 2024 GreenDocRCicon.png Documents blue icon 413.svg.png
STAR-CCM++ Computation Fluid Dynamics Siemens 10.06.010_01_win6-r8 Documents blue icon 413.svg.png
Tecplot Data Visualization & Analysis tecplot 360ex Documents blue icon 413.svg.png
Development / Runtime tools
Intel OneAPI Base toolkit Heterogeneous Development

toolkit

Intel Inc. 2023.2.0 GreenDocRCicon.png Documents blue icon 413.svg.png
Intel HPC toolkit HPC Specific Development

toolkit

Intel Inc. 2024.0.0 GreenDocRCicon.png Documents blue icon 413.svg.png
Intel C++ compiler Legacy Compiler Intel Inc. 11.1 Documents blue icon 413.svg.png
Intel Visual Fortran compiler Legacy Compiler Intel Inc. 11.1, SP1, 2011, 2013-sp1, 2013.1.119, 2013.3.171 GreenDocRCicon.png Documents blue icon 413.svg.png
Java JDK Programming Language Oracle 1.7.0 Documents blue icon 413.svg.png
PGI Compiler Compiler Suite PGroup 2015 GreenDocRCicon.png Documents blue icon 413.svg.png
VirtualBox Virtualization Oracle 4.2.6, 4.3.14, 4.3.20, 4.3.4, 4.3.6, 4.3.20, 5.0.12, 5.0.20 GreenDocRCicon.png Documents blue icon 413.svg.png
VisualStudio IDE Microsoft 2008Pro, 2010Pro, 2010ProSP1, 2019CommunityEdition GreenDocRCicon.png Documents blue icon 413.svg.png
Utilities
Cyberduck FTP & SFTP client cyberduck.io Documents blue icon 413.svg.png
FileZilla File manager filezilla-project.org any GreenDocRCicon.png Documents blue icon 413.svg.png
LaTex editors:

Miktex, Texmakerwin, winedt

High-quality typesetting system latex-project.org miktex-2.9.4407, texmakerwin32, winedt54 Documents blue icon 413.svg.png
MobaXterm X server and SSH client Mobateck 8.4, v9.0, v10.2 GreenDocRCicon.png Documents blue icon 413.svg.png
PuTTY Terminal emulator and

remote SSH connection

putty.org any GreenDocRCicon.png Documents blue icon 413.svg.png
WinSCP Windows File Manager WinSCP.net any GreenDocRCicon.png Documents blue icon 413.svg.png

GPU Cluster (raad2-gfx)

Software listed in this section is deployed on the GPU cluster raad2-gfx. Each package is licensed under a different agreement. Users are required to review and abide by all applicable license terms.

Users may contact us via the Service Desk (servicedesk@qatar.tamu.edu) to request installation of packages not currently found on the list below. Note that applications required by individual users (particularly open source packages) may also be installed by the user himself/herself within their home directory; such installs do not require administrative rights. If a new package is likely to be used by multiple users however, or if a user does not have the know-how to install a package themselves, our staff may be requested to perform the install.


Product Domain Vendor Version Internal

Documentation

External

Documentation

Comment
Scientific Applications
Avizo Image Analysis Thermofisher 7.0, 8.0, 8.0.1, 8.1, 9.2, 2019.4, 2021.2, 2023.1.1 GreenDocRCicon.png Documents blue icon 413.svg.png
BigDFT Density Functional Theory OpenSource GreenDocRCicon.png Documents blue icon 413.svg.png
CMG Builder Reservoir Simulation Models CMG GreenDocRCicon.png Documents blue icon 413.svg.png
CMG Results Reservoir Visualization CMG GreenDocRCicon.png Documents blue icon 413.svg.png
EnSight Simulation Data Visualization ANSYS Inc. 100Full-10.0.2h GreenDocRCicon.png Documents blue icon 413.svg.png
FlightGear Flight Simulation Flightgear.org GreenDocRCicon.png Documents blue icon 413.svg.png
GROMACS GPU Molecular Dynamics GROMACS 2018.2 GreenDocRCicon.png Documents blue icon 413.svg.png
LAMMPS GPU Molecular Dynamics Sandia National Labs 2018.10 GreenDocRCicon.png Documents blue icon 413.svg.png
MATLAB GPU Numerical Analysis The Mathworks r2014a GreenDocRCicon.png Documents blue icon 413.svg.png
NAMD GPU Molecular Dynamics uiuc.edu 2.13 GreenDocRCicon.png Documents blue icon 413.svg.png
OpenSceneGraph 3D graphics toolkit OpenSceneGraph GreenDocRCicon.png Documents blue icon 413.svg.png
ParaView Data Visualization Paraview.org GreenDocRCicon.png Documents blue icon 413.svg.png
PyTorch Machine Learning Pytorch.org Documents blue icon 413.svg.png
Rhino3D CAD Modelling Software Rhinoceros 4.0 GreenDocRCicon.png Documents blue icon 413.svg.png
SLURM Workload Manager SchedMD 20.02.6, 20.11.7, 21.08.0 GreenDocRCicon.png Documents blue icon 413.svg.png
SketchUp 3D Design Software Trimble GreenDocRCicon.png Documents blue icon 413.svg.png
TensorFlow Machine Learning Tensorflow.org GreenDocRCicon.png Documents blue icon 413.svg.png
Visualization Toolkit Library

(VTK)

3D Graphics and scientific

visualization

VTK GreenDocRCicon.png Documents blue icon 413.svg.png
Vizard Virtual Reality Toolkit VR eye-tracking worldviz GreenDocRCicon.png Documents blue icon 413.svg.png
Development tools
Anaconda Python package management ANACONDA GreenDocRCicon.png Documents blue icon 413.svg.png
CUDA C++ GPU Programming Nvidia 10.1, 10.2, 11.0, 11.1, 11.2, 11.6, 11.8 GreenDocRCicon.png Documents blue icon 413.svg.png
cuDNN Deep Neural Network accelerator Nvidia cudnn7.6-cuda10.2, cudnn8.0-cuda10.2, cudnn8.0-cuda11.0, cudnn8.0-cuda11.1, cudnn8.1-cuda11.2, cudnn8.5-cuda11.8 Documents blue icon 413.svg.png
GDB Debbugger GNU 8.2-11.el8 Documents blue icon 413.svg.png
GlobalArrays Partitioned Global Address

Space programming

Pacific Northwest

National Lab.

5.7 Documents blue icon 413.svg.png
hwloc Hardware resource discovering open-mpi.org 1.11.11 Documents blue icon 413.svg.png
Julia Parallele Programming Language julialang.org 1.2.0 GreenDocRCicon.png Documents blue icon 413.svg.png
Jupyter Lab Interactive Computing Jupyter.org GreenDocRCicon.png Documents blue icon 413.svg.png
Python GPU Programming Language 2.7.9 GreenDocRCicon.png Documents blue icon 413.svg.png
RAPIDSai GPU Data Management rapids.ai rapids0.13-cuda10.0, rapidsai_0.18-cuda11.0 Documents blue icon 413.svg.png
Libraries
BLACS Linear algebra oriented MPI The Netlib 1.1patch03
BLAS Vector and Matrix operations The Netlib 3.8.0 Documents blue icon 413.svg.png
FFTW Discrete Fourier Transform

computation

fftw.org 3.3.8 Documents blue icon 413.svg.png
HDF5 Data Management HDFGroup.net 1.8.21, 1.10.1 Documents blue icon 413.svg.png
LAPACK Numerical linear algebra The Netlib 3.9.0 Documents blue icon 413.svg.png
MPICH Message Passing library mpich.org 3.3.2 GreenDocRCicon.png Documents blue icon 413.svg.png
MVAPICH2 Message Passing library The Ohio State

University

2.3.4 GreenDocRCicon.png Documents blue icon 413.svg.png
NetCDF Data Management UCAR 4.7.3 Documents blue icon 413.svg.png
OpenBLAS Vector and Matrix operations openblas.net 0.3.7 Documents blue icon 413.svg.png
OpenMPI Message Passing library open-mpi.org 1.10.7, 3.1.6 GreenDocRCicon.png Documents blue icon 413.svg.png
UCX HPC Communication framework openucx.org 1.8.1 Documents blue icon 413.svg.png